{"text_format":"1","workbook":"xlsx","n_sheets":5,"sheets":["IDF","SDRF","IDF_example","SDRF_example","restore_SDRF"],"not_rendered":{"charts":0,"images":0,"macros":1,"external_links":1,"defined_names":86,"comments":0,"pivot_tables":0},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900"}

{"sheet":"IDF","index":0,"n_rows":141,"n_cols":9,"rows_kept":141,"cut":false,"hidden":false,"merged":[[4,1,4,3],[6,1,6,3],[68,0,68,1],[49,3,49,6],[2,0,2,1]]}
["# Template submission sheet for FungiNet microarray experiments  (yellow and green cells are mandatory)",null,"used Lookup Table Version:","V2.2_20190709"]
["[IDF] Investigation Description File"]
["For further information, please read Description_Templates_V2.2.doc"]
["# This section contains the top-level information for your experiment"]
["Investigation Title"]
["Experiment Class",{"$f":"IF(IDF!B5=\"\",\"\",\"transcription profiling by array\")","v":""}]
["Experiment Description"]
["Experimental Design"]
["Experimental Design Term Source REF",{"$f":"IF(B8=\"\",\"\",\"MGED Ontology\")","v":""}]
["FungiNet Project"]
[]
["# 'Experimental Factors' used to describe the variables investigated by your experiment"]
["Experimental Factor Name"]
["Experimental Factor Type"]
["Experimental Factor Term Source REF",{"$f":"IF(B14=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(C14=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(D14=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(E14=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(F14=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(#REF!=\"\",\"\",\"MGED Ontology\")","v":{"$error":"#REF!"}},{"$f":"IF(#REF!=\"\",\"\",\"MGED Ontology\")","v":{"$error":"#REF!"}}]
[]
["# Quality control information"]
["Quality Control Type"]
["Quality Control Term Source REF",{"$f":"IF(B18=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(C18=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(D18=\"\",\"\",\"MGED Ontology\")","v":""}]
[]
["# Data release information"]
["Public Release Date"]
["Database"]
["Accession Number"]
[]
["# Personal information about the data submitter(s) and investigator(s)"]
["Person Last Name"]
["Person First Name"]
["Person Mid Initials"]
["Person Email"]
["Person Phone"]
["Person Address"]
["Person Affiliation - Institution"]
["Person Affiliation - Department"]
["Person Roles"]
[]
["Cooperation partners within FungiNet - Institution"]
["Cooperation partners within FungiNet - Department"]
["Cooperation partners within SysMoDB"]
["Other cooperation partners"]
[]
["# Publications based on the data described in this file"]
["PubMed ID"]
["Publication DOI or Journal/Book Title"]
["Publication Author List"]
["Publication Title"]
["Publication Status"]
[]
["# Protocols (Standard Operation Procedures, SOPs)  - new protocols may only be added by the infrastructure team"]
["#","Extraction Protocols","Hybridization Protocols","Data Processing Protocols",null,null,null,"Storage Protocols"]
["Protocol Name","RNA EXTRACTION","HYBRIDIZATION","IMAGE ACQUISITION","NORMALIZATION","DIFFERENTIAL EXPRESSION FILTERING","ANNOTATION","STORAGE","NO STORAGE"]
["Protocol URI","rna_extraction","hybridization","image_acquisition","Normalization","filtering","annotation","storage","no_storage"]
["Protocol Type","nucleic_acid_extraction","hybridization","image_acquisition","unknown_protocol_type","unknown_protocol_type","unknown_protocol_type","store","store"]
["Protocol Term Source REF","MGED Ontology","MGED Ontology","MGED Ontology",null,null,null,"MGED Ontology","MGED Ontology"]
["Protocol Description","details of RNA extraction from the biological sample","details of the hybridization process","details of scanning and image processing","data preprocessing","details of filtering for differentially regulated genes","functional annotation of all genes in the dataset","storage of data ","no storage of data"]
["Protocol Parameters","260/280; 230/280; RIN/ RNA integrity number; Concentration; Volume","Label; Array Manufacturer; Performer; TechnologyType",null,null,null,"Source, Version and Date of Annotation"]
["Protocol Hardware"]
["Protocol Software"]
[]
["# Controlled vocabulary sources - new sources may only be added by the data management team"]
["Term Source Name","MGED Ontology"]
["Term Source File","http://mged.sourceforge.net/ontologies/MGEDontology.php"]
["Term Source Version","1.3.1.1"]
[]
["# Filename of the 'SDRF' part belonging to this 'IDF' part"]
["SDRF File",{"$f":"MID(CELL(\"Dateiname\"),SEARCH(\"[\",CELL(\"Dateiname\"))+1,SEARCH(\"]\",CELL(\"Dateiname\"))-SEARCH(\"[\",CELL(\"Dateiname\"))-1)","v":"FungiNet_template_microarray_V2.2.xlsm"}]
[]
["# Default values for data transfer into the SDRF sheet (Macros must be activated)"]
[]
["# Default Sample Material Type"]
["# Default Organism"]
["# Default Strain or Line"]
["# Default Organism Part"]
["# Default Organism Status"]
["# Default Number of fungal cells"]
["# Default Unit for number of fungal cells"]
["# Default Sex"]
["# Default Age"]
["# Default Age Time Unit"]
["# Default Sampling Time Point"]
["# Default Sampling Time Point Unit"]
["# Default Temperature in °C"]
["# Default Temperature Unit"]
["# Default pH"]
["# Default Atmosphere"]
["# Default Compound"]
["# Default Medium"]
["# Default Nutrient"]
["# Default Biobank Storage Protocol"]
["# Default Biobank Storage Date"]
["# Default Biobank Storage Location"]
["# Default RNA Extraction Protocol",{"$f":"IF(IDF!$B$71=\"\",\"\",IDF!$B$51)","v":""}]
[]
["# Default 260/280 Ratio"]
["# Default 230/280 Ratio"]
["# Default RIN/ RNA integrity number"]
["# Default RNA Concentration"]
["# Default RNA Concentration Unit"]
["# Default RNA Volume"]
["# Default RNA Volume Unit"]
["# Default RNA Extraction Kit"]
["# Default RNA Material Type",{"$f":"IF($B$92=\"\",\"\",\"total_RNA\")","v":""}]
["# Default RNA Extraction Date"]
["# Default RNA Storage Protocol"]
["# Default RNA Storage Date"]
["# Default RNA Storage Location"]
["# Default Hybridization Protocol",{"$f":"IF(IDF!$B$71=\"\",\"\",IDF!$C51)","v":""}]
[]
["# Default Label"]
["# Default Array Manufacturer"]
["# Default Chip Description File"]
["# Default Hybridization Performer"]
["# Default Hybridization Technology Type"]
["# Default Hybridization Date"]
["# Default Hybridization Storage Protocol",{"$f":"IF($B71=\"\",\"\",\"STORAGE\")","v":""}]
["# Default Hybridization Storage Date"]
["# Default Hybridization Storage Location - Server"]
["# Default Hybridization Storage Location - Folder"]
[]
["# Default Data Processing Protocol",{"$f":"IF(AND($D$58=\"\",$D$57=\"\"),\"\",$D$51)","v":""}]
["# Default Data Processing Hardware",{"$f":"IF(D57=\"\",\"\",D57)","v":""}]
["# Default Data Processing Software",{"$f":"IF(D58=\"\",\"\",D58)","v":""}]
["# Default Data Processing Parameters and Values"]
[]
["# Default Data Processing Protocol",{"$f":"IF(E58=\"\",\"\",E51)","v":""}]
["# Default Data Processing Software",{"$f":"IF(E58=\"\",\"\",E58)","v":""}]
["# Default Data Processing Parameters and Values"]
[]
["# Default Data Processing Protocol",{"$f":"IF(F58=\"\",\"\",F51)","v":""}]
["# Default Data Processing Software",{"$f":"IF(F58=\"\",\"\",F58)","v":""}]
["# Default Data Processing Parameters and Values"]
[]
["# Default Data Processing Protocol",{"$f":"IF($B92=\"\",\"\",\"ANNOTATION\")","v":""}]
["# Default Functional Annotation Source"]
["# Default Functional Annotation Version"]
["# Default Functional Annotation Date"]
["# Default Functional Annotation Data File"]
["# Default Data Processing Storage Protocol",{"$f":"IF($B92=\"\",\"\",\"STORAGE\")","v":""}]
["# Default Data Processing Storage Date"]
["# Default Data Processing Storage Location - Server"]
["# Default Data Processing Storage Location - Folder"]

{"sheet":"SDRF","index":1,"n_rows":250,"n_cols":81,"rows_kept":250,"cut":false,"hidden":false,"merged":[[5,80,5,82],[5,74,5,78],[5,51,5,73],[0,0,0,2],[1,0,1,1],[5,0,5,22],[5,23,5,37],[5,38,5,50],[2,0,2,2]]}
["# Template submission sheet for FungiNet microarray experiments"]
["[SDRF] Sample and Data Relationship File"]
["# Please fill in as much columns as possible, yellow and green cells are mandatory"]
[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,33]
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["# Source",null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"RNA Extraction",null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Hybridization and Scanning",null,null,null,null,null,null,null,null,null,null,null,null,"Data Processing",null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Experimental Factor Values",null,null,null,null,"Term Source","Fold Change Assignment"]
["# Specimen","Material Type","Organism","Strain or Line","Organism Part","OrganismStatus","Number of fungal cells","Unit for number of fungal cells","Sex","Age","Age Time Unit","Sampling Time Point","Sampling Time Point Unit","Temperature in °C","Temperature Unit","pH","Atmosphere","Compound","Media","Nutrients","Storage Protocol","Storage Date","Storage Location","Extraction Protocol","Extract Name","260/280","230/280","RIN / RNA integrity number","Concentration","Concentration Unit","Volume","Volume Unit","Extraction Kit","Material Type","Extraction Date","Storage Protocol","Storage Date","Storage Location","Hybridization Protocol","Assay Name","Label","Array Manufacturer","Chip Description File","Hybridization Performer","Technology Type","Hybridization Date","Storage Protocol","Storage Date","Storage Location - Server","Storage Location - Folder","Data File","Image Acquisition Protocol","Image Acquisition Hardware","Image Acquisition Software","Parameters And Values","Description","Data Processing Protocol","Data Processing Software","Parameters And Values","Description","Data Processing Protocol","Data Processing Software","Parameters And Values","Description","Data Processing Protocol","Functional Annotation Source","Functional Annotation Version","Functional Annotation Date","Functional Annotation Data File","Storage Protocol","Storage Date","Storage Location - Server","Storage Location - Folder","Derived Data File",{"$f":"IF(IDF!B$13=\"\",\"\",IDF!$B13)","v":""},{"$f":"IF(IDF!C$13=\"\",\"\",IDF!C$13)","v":""},{"$f":"IF(IDF!D$13=\"\",\"\",IDF!D$13)","v":""},{"$f":"IF(IDF!E$13=\"\",\"\",IDF!E$13)","v":""},{"$f":"IF(IDF!F$13=\"\",\"\",IDF!F$13)","v":""},"Term Source"]
["Source Name","Material Type","Characteristics[Organism]","Characteristics[StrainOrLine]","Characteristics[OrganismPart]","Characteristics[OrganismStatus]","Characteristics[Number of fungal organisms]","Unit[CellUnit]","Characteristics[Sex]","Characteristics[Age]","Unit[TimeUnit]","Characteristics[SamplingTimePoint]","Unit[TimeUnit]","Characteristics[Temperature]","Unit[TemperatureUnit]","Characteristics[pH]","Characteristics[Atmosphere]","Characteristics[Compound]","Characteristics[Media]","Characteristics[Nutrients]","Protocol REF","Date","Comment","Protocol REF","Extract Name","Parameter[260/280]","Parameter[230/280]","Parameter[RIN/RNA integrity number]","Parameter[Concentration]","Unit[ConcentrationUnit]","Parameter[Volume]","Unit[VolumeUnit]","Parameter[Kit]","Material Type","Date","Protocol REF","Date","Comment","Protocol REF","Assay Name","Parameter[Label]","Parameter[Array Manufacturer]","Parameter[Chip Description File]","Parameter[Performer]","Parameter[Technology Type]","Date","Protocol REF","Date","Comment",null,"Array Data File","Protocol REF","Protocol Hardware","Protocol Software","Comment[Parameters]","Descrition","Protocol REF","Protocol Software","Comment[Parameters]","Descrition","Protocol REF","Protocol Software","Comment[Parameters]","Description","Protocol REF","Comment[Annot_source]","Comment[Annot_Version]","Date","Comment[Annot_File]","Protocol REF","Date","Comment",null,"Derived Array Data Matrix File",{"$f":"\"Factor Value[\"&BW7&\"]\"","v":"Factor Value[]"},{"$f":"\"Factor Value[\"&BX7&\"]\"","v":"Factor Value[]"},{"$f":"\"Factor Value[\"&BY7&\"]\"","v":"Factor Value[]"},{"$f":"\"Factor Value[\"&BZ7&\"]\"","v":"Factor Value[]"},{"$f":"\"Factor Value[\"&CA7&\"]\"","v":"Factor Value[]"},"Term Source REF"]
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{"sheet":"IDF_example","index":2,"n_rows":141,"n_cols":9,"rows_kept":141,"cut":false,"hidden":false,"merged":[[4,1,4,3],[6,1,6,3],[49,3,49,6],[68,0,68,1]]}
["# Template submission sheet for FungiNet microarray experiments - Example",null,"used Lookup Table Version:","V1.9.4_20150827"]
["[IDF] Investigation Description File"]
[]
["# This section contains the top-level information for your experiment"]
["Investigation Title","GprC and GprD are essential regulators of colony growth, hyphal morphogenesis and virulence in A.fu."]
["Experiment Class",{"$f":"IF(IDF_example!B5=\"\",\"\",\"transcription profiling by array\")","v":"transcription profiling by array"}]
["Experiment Description"]
["Experimental Design","genetic_modification_design"]
["Experimental Design Term Source REF",{"$f":"IF(B8=\"\",\"\",\"MGED Ontology\")","v":"MGED Ontology"}]
["FungiNet Project"]
[]
["# 'Experimental Factors' used to describe the variables investigated by your experiment"]
["Experimental Factor Name","Mutation"]
["Experimental Factor Type","strain_or_line"]
["Experimental Factor Term Source REF",{"$f":"IF(B14=\"\",\"\",\"MGED Ontology\")","v":"MGED Ontology"},{"$f":"IF(C14=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(D14=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(E14=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(F14=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(#REF!=\"\",\"\",\"MGED Ontology\")","v":{"$error":"#REF!"}},{"$f":"IF(#REF!=\"\",\"\",\"MGED Ontology\")","v":{"$error":"#REF!"}}]
[]
["# Quality control information"]
["Quality Control Type","biological_replicate"]
["Quality Control Term Source REF",{"$f":"IF(B18=\"\",\"\",\"MGED Ontology\")","v":"MGED Ontology"},{"$f":"IF(C18=\"\",\"\",\"MGED Ontology\")","v":""},{"$f":"IF(#REF!=\"\",\"\",\"MGED Ontology\")","v":{"$error":"#REF!"}},{"$f":"IF(#REF!=\"\",\"\",\"MGED Ontology\")","v":{"$error":"#REF!"}},{"$f":"IF(#REF!=\"\",\"\",\"MGED Ontology\")","v":{"$error":"#REF!"}},{"$f":"IF(#REF!=\"\",\"\",\"MGED Ontology\")","v":{"$error":"#REF!"}},{"$f":"IF(#REF!=\"\",\"\",\"MGED Ontology\")","v":{"$error":"#REF!"}}]
[]
["# Data release information"]
["Public Release Date"]
["Database"]
["Accession Number"]
[]
["# Personal information about the data submitter(s) and investigator(s)"]
["Person Last Name","Gehrke","Albrecht"]
["Person First Name","Alexander","Daniela"]
["Person Mid Initials"]
["Person Email","Alexander.Gehrke@hki-jena.de","Daniela-Albrecht@hki-jena.de"]
["Person Phone"]
["Person Address"]
["Person Affiliation - Institution","Hans-Knöll-Institute Jena","Hans-Knöll-Institute Jena"]
["Person Affiliation - Department","Molecular and Applied Microbiology","Systems Biology / Bioinformatics"]
["Person Roles","investigator","submitter"]
[]
["Cooperation partners within FungiNet - Institution"]
["Cooperation partners within FungiNet - Department"]
["Cooperation partners within SysMoDB"]
["Other cooperation partners"]
[]
["# Publications based on the data described in this file"]
["PubMed ID",20418440]
["Publication DOI or Journal/Book Title","10.1128/AEM.00052-10 "]
["Publication Author List","Gehrke A, Heinekamp T, Jacobsen ID, Brakhage AA"]
["Publication Title","Heptahelical receptors GprC and GprD of Aspergillus fumigatus Are essential regulators of colony growth, hyphal morphogenesis, and virulence"]
["Publication Status","published"]
[]
["# Protocols (Standard Operation Procedures, SOPs)  - new protocols may only be added by the infrastructure team"]
["#","Extraction Protocols","Hybridization Protocols","Data Processing Protocols",null,null,null,"Storage Protocols"]
["Protocol Name","RNA EXTRACTION","HYBRIDIZATION","IMAGE ACQUISITION","NORMALIZATION","DIFFERENTIAL EXPRESSION FILTERING","ANNOTATION","STORAGE","NO STORAGE"]
["Protocol URI","rna_extraction","hybridization","image_acquisition","Normalization","filtering","annotation","storage","no_storage"]
["Protocol Type","nucleic_acid_extraction","hybridization","image_acquisition","unknown_protocol_type","unknown_protocol_type","unknown_protocol_type","store","store"]
["Protocol Term Source REF","MGED Ontology","MGED Ontology","MGED Ontology",null,null,null,"MGED Ontology","MGED Ontology"]
["Protocol Description","details of RNA extraction from the biological sample","details of the hybridization process","details of image acquisition","data preprocessing","details of filtering for differentially regulated genes","functional annotation of all genes in the dataset","storage of data ","no storage of data"]
["Protocol Parameters","260/280; 230/280; RIN/ RNA integrity number; Concentration; Volume","Label; Array Manufacturer; Performer; TechnologyType",null,null,null,"Source, Version and Date of Annotation"]
["Protocol Hardware",null,null,"iScan"]
["Protocol Software",null,null,"GenePix","Comprehensive Biomarker Center GmbH (formerly febit)","Comprehensive Biomarker Center GmbH (formerly febit)"]
[]
["# Controlled vocabulary sources - new sources may only be added by the data management team"]
["Term Source Name","MGED Ontology"]
["Term Source File","http://mged.sourceforge.net/ontologies/MGEDontology.php"]
["Term Source Version","1.3.1.1"]
[]
["# Filename of the 'SDRF' part belonging to this 'IDF' part"]
["SDRF File",{"$f":"MID(CELL(\"Dateiname\"),SEARCH(\"[\",CELL(\"Dateiname\"))+1,SEARCH(\"]\",CELL(\"Dateiname\"))-SEARCH(\"[\",CELL(\"Dateiname\"))-1)","v":"FungiNet_template_microarray_V2.2.xlsm"}]
[]
["# Default values for filling in data automatically in the SDRF sheet (Macros must be activated)"]
[]
["# Default Biobank Material Type","whole_organism"]
["# Default Organism","Aspergillus fumigatus"]
["# Default Strain or Line"]
["# Default Organism Part","all"]
["# Default Organism Status","fresh"]
["# Default Number of fungal organisms"]
["# Default Unit for number of fungal organisms"]
["# Default Sex","not applicable"]
["# Default Age",18]
["# Default Age Time Unit","hour(s)"]
["# Default Sampling Time Point"]
["# Default Sampling Time Point Unit"]
["# Default Temperature in °C",37]
["# Default Temperature Unit","degrees_C"]
["# Default pH"]
["# Default Atmosphere","air"]
["# Default Compound","none"]
["# Default Medium","AMM"]
["# Default Nutrient","none"]
["# Default Biobank Storage Protocol","NO STORAGE"]
["# Default Biobank Storage Date"]
["# Default Biobank Storage Location","no storage"]
["# Default RNA Extraction Protocol","RNA EXTRACTION"]
[]
[]
[]
[]
["# Default RNA Concentration",50]
["# Default RNA Concentration Unit","ng/μl"]
["# Default RNA Volume"]
["# Default RNA Volume Unit"]
["# Default RNA Extraction Kit","RNA extraction kit"]
["# Default RNA Material Type",{"$f":"IF($B$92=\"\",\"\",\"total_RNA\")","v":"total_RNA"}]
["# Default RNA Extraction Date","2009-01-01"]
["# Default RNA Storage Protocol","NO STORAGE"]
["# Default RNA Storage Date"]
["# Default RNA Storage Location","no storage"]
["# Default Hybridization Protocol",{"$f":"C51","v":"HYBRIDIZATION"}]
[]
["# Default Label","Biotin"]
["# Default Array Manufacturer","Comprehensive Biomarker Center GmbH (formerly febit)"]
["# Default Chip Description File"]
["# Default Hybridization Performer","Comprehensive Biomarker Center GmbH (formerly febit)"]
["# Default Hybridization Technology Type","one-color"]
["# Default Hybridization Date"]
["# Default Hybridization Storage Protocol","STORAGE"]
["# Default Hybridization Storage Date"]
["# Default Hybridization Storage Location - Server","stored at HKI Jena"]
["# Default Hybridization Storage Location - Folder"]
[]
["# Default Data Processing Protocol",{"$f":"IF(D58=\"\",\"\",D51)","v":"IMAGE ACQUISITION"}]
["# Default Data Processing Hardware",{"$f":"IF(D57=\"\",\"\",D57)","v":"iScan"}]
["# Default Data Processing Software",{"$f":"IF(D58=\"\",\"\",D58)","v":"GenePix"}]
[]
["# Default Data Processing Parameters and Values"]
["# Default Data Processing Protocol",{"$f":"IF(E58=\"\",\"\",E51)","v":"NORMALIZATION"}]
["# Default Data Processing Software",{"$f":"IF(E58=\"\",\"\",E58)","v":"Comprehensive Biomarker Center GmbH (formerly febit)"}]
["# Default Data Processing Parameters and Values"]
[]
["# Default Data Processing Protocol",{"$f":"IF(F58=\"\",\"\",F51)","v":"DIFFERENTIAL EXPRESSION FILTERING"}]
["# Default Data Processing Software",{"$f":"IF(F58=\"\",\"\",F58)","v":"Comprehensive Biomarker Center GmbH (formerly febit)"}]
["# Default Data Processing Parameters and Values"]
[]
["# Default Data Processing Protocol","ANNOTATION"]
["# Default Functional Annotation Source","AspGD"]
["# Default Functional Annotation Version","s03-m04-r22"]
["# Default Functional Annotation Date","2009-06-01"]
["# Default Functional Annotation Data File","A_fumigatus_Af293_current_chromosomal_feature.tab"]
["# Default Data Processing Storage Protocol","STORAGE"]
["# Default Data Processing Storage Date"]
["# Default Data Processing Storage Location - Server"]
["# Default Data Processing Storage Location - Folder"]

{"sheet":"SDRF_example","index":3,"n_rows":101,"n_cols":81,"rows_kept":101,"cut":false,"hidden":false,"merged":[[4,79,4,81],[4,73,4,77],[0,0,0,2],[4,0,4,22],[4,23,4,37],[4,38,4,50],[4,51,4,72]]}
["# Template submission sheet for FungiNet microarray experiments - Example"]
[]
[]
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["# Source",null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"RNA Extraction and Labeling",null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Hybridization and Scanning",null,null,null,null,null,null,null,null,null,null,null,null,"Data Processing",null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Experimental Factor Values",null,null,null,null,"Term Source","Fold Change Assignment"]
["# Specimen","Material Type","Organism","Strain or Line","Organism Part","OrganismStatus","Number of fungal organisms","Unit for number of fungi","Sex (only for mice)","Age","Age Time Unit","Sampling Time Point","Sampling Time Point Unit","Temperature in °C","Temperature Unit","pH","Atmosphere","Compound","Media","Nutrients","Storage Protocol","Storage Date","Storage Location","Extraction Protocol","Extract Name","260/280","230/280","RIN/ RNA integrity number","Concentration","Unit","Volume","Unit","Extraction Kit","Material Type","Extraction Date","Storage Protocol","Storage Date","Storage Location","Hybridization Protocol","Assay Name","Label","Array Manufacturer","Chip Description File","Hybridization Performer","Technology Type","Hybridization Date","Storage Protocol","Storage Date","Storage Location - Server","Storage Location - Folder","Data File","Image Acquisition Protocol","Image Acquisition Hardware","Image Acquisition Software","Parameters And Values","Description","Data Processing Protocol","Data Processing Software","Parameters And Values","Description","Data Processing Protocol","Data Processing Software","Parameters And Values","Description","Data Processing Protocol","Functional Annotation Source","Functional Annotation Version","Functional Annotation Date","Functional Annotation Data File","Storage Protocol","Storage Date","Storage Location","Derived Data File",{"$f":"IF(IDF_example!B$13=\"\",\"\",IDF_example!$B13)","v":"Mutation"},{"$f":"IF(IDF_example!C$13=\"\",\"\",IDF_example!C$13)","v":""},{"$f":"IF(IDF_example!D$13=\"\",\"\",IDF_example!D$13)","v":""},{"$f":"IF(IDF_example!E$13=\"\",\"\",IDF_example!E$13)","v":""},{"$f":"IF(IDF_example!F$13=\"\",\"\",IDF_example!F$13)","v":""},"Term Source","wt vs Gprc","wt vs GprD"]
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